HL_12DP_024
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCUAGGGGGCCCACCAGCCUACCAAAC
- Length
- 27 nucleotides
- Bulged bases
- 12DP|1|1A|A|887, 12DP|1|1A|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
12DP|1|1A|G|875
12DP|1|1A|C|876
12DP|1|1A|U|877
12DP|1|1A|A|878
12DP|1|1A|G|879
12DP|1|1A|G|880
12DP|1|1A|G|881
12DP|1|1A|G|882
12DP|1|1A|G|883
12DP|1|1A|C|884
12DP|1|1A|C|885
12DP|1|1A|C|886
12DP|1|1A|A|887
12DP|1|1A|C|888
12DP|1|1A|C|889
12DP|1|1A|A|890
12DP|1|1A|G|892
12DP|1|1A|C|893
12DP|1|1A|C|894
12DP|1|1A|U|895
12DP|1|1A|A|896
12DP|1|1A|C|897
12DP|1|1A|C|898
12DP|1|1A|A|899
12DP|1|1A|A|900
12DP|1|1A|A|901
12DP|1|1A|C|902
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
- Chain 1m
- 30S ribosomal protein S13
Coloring options: