HL_12DP_093

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

12DP|1|1a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_093 not in the Motif Atlas

Homologous match to HL_8B0X_022

Geometric discrepancy: 0.1002

The information below is about HL_8B0X_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

12DP|1|1a|G|1089
12DP|1|1a|U|1090
12DP|1|1a|U|1091
12DP|1|1a|A|1092
12DP|1|1a|A|1093
12DP|1|1a|G|1094
12DP|1|1a|U|1095
12DP|1|1a|C|1096

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1g

30S ribosomal protein S7