HL_12DP_105

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_105 not in the Motif Atlas

Geometric match to HL_9DFE_002

Geometric discrepancy: 0.0997

The information below is about HL_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

12DP|1|2A|C|87
12DP|1|2A|G|88
12DP|1|2A|G|89
12DP|1|2A|U|90
12DP|1|2A|A|92
12DP|1|2A|G|93
12DP|1|2A|C|94
12DP|1|2A|G|94|||A
12DP|1|2A|G|95

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2X

50S ribosomal protein L23

Chain 2Y

50S ribosomal protein L24