HL_12DP_169

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_169 not in the Motif Atlas

Homologous match to HL_8B0X_001

Geometric discrepancy: 0.0826

The information below is about HL_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.4

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|U|12
12DP|1|2a|U|13
12DP|1|2a|U|14
12DP|1|2a|G|15
12DP|1|2a|A|16
12DP|1|2a|U|17
12DP|1|2a|C|18
12DP|1|2a|C|19
12DP|1|2a|U|20
12DP|1|2a|G|21
12DP|1|2a|G|22

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5

Chain 2l

30S ribosomal protein S12