HL_12DP_173

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

12DP|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_173 not in the Motif Atlas

Homologous match to HL_8B0X_005

Geometric discrepancy: 0.1785

The information below is about HL_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

12DP|1|2a|G|259
12DP|1|2a|G|260
12DP|1|2a|U|261
12DP|1|2a|A|262
12DP|1|2a|A|263
12DP|1|2a|U|264
12DP|1|2a|G|265
12DP|1|2a|G|266
12DP|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20