HL_12DP_175

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_175 not in the Motif Atlas

Homologous match to HL_8B0X_007

Geometric discrepancy: 0.0914

The information below is about HL_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

12DP|1|2a|C|320
12DP|1|2a|A|321
12DP|1|2a|C|322
12DP|1|2a|U|323
12DP|1|2a|G|324
12DP|1|2a|A|325
12DP|1|2a|G|326
12DP|1|2a|A|327
12DP|1|2a|C|328
12DP|1|2a|A|329
12DP|1|2a|C|330
12DP|1|2a|G|331
12DP|1|2a|G|332
12DP|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20