HL_12DQ_007

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_007 not in the Motif Atlas

Homologous match to HL_8B0X_040

Geometric discrepancy: 0.0966

The information below is about HL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

12DQ|1|1A|C|246
12DQ|1|1A|G|247
12DQ|1|1A|G|248
12DQ|1|1A|C|249
12DQ|1|1A|G|250
12DQ|1|1A|A|251
12DQ|1|1A|G|252

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15