HL_12DQ_025

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

12DQ|1|1A|U|958, 12DQ|1|1A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.3424

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

12DQ|1|1A|C|955
12DQ|1|1A|G|956
12DQ|1|1A|A|957
12DQ|1|1A|U|958
12DQ|1|1A|A|959
12DQ|1|1A|A|960
12DQ|1|1A|C|961
12DQ|1|1A|G|962

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16