HL_12DQ_027

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

12DQ|1|1A|G|1068, 12DQ|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|1A|C|1064
12DQ|1|1A|U|1065
12DQ|1|1A|U|1066
12DQ|1|1A|A|1067
12DQ|1|1A|G|1068
12DQ|1|1A|A|1069
12DQ|1|1A|A|1070
12DQ|1|1A|G|1071
12DQ|1|1A|C|1072
12DQ|1|1A|A|1073
12DQ|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16