HL_12DQ_034

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

12DQ|1|1A|U|1396, 12DQ|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_034 not in the Motif Atlas

Homologous match to HL_8B0X_063

Geometric discrepancy: 0.1134

The information below is about HL_8B0X_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

12DQ|1|1A|G|1389
12DQ|1|1A|U|1390
12DQ|1|1A|U|1391
12DQ|1|1A|A|1392
12DQ|1|1A|A|1393
12DQ|1|1A|U|1394
12DQ|1|1A|A|1395
12DQ|1|1A|U|1396
12DQ|1|1A|U|1397
12DQ|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23