HL_12DQ_049

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

12DQ|1|1A|C|2145, 12DQ|1|1A|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_049 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.4898

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

12DQ|1|1A|C|2143
12DQ|1|1A|U|2144
12DQ|1|1A|C|2145
12DQ|1|1A|C|2146
12DQ|1|1A|G|2147
12DQ|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains