HL_12DQ_060

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_060 not in the Motif Atlas

Homologous match to HL_8B0X_089

Geometric discrepancy: 0.0647

The information below is about HL_8B0X_089

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

12DQ|1|1A|C|2551
12DQ|1|1A|OMU|2552
12DQ|1|1A|G|2553
12DQ|1|1A|U|2554
12DQ|1|1A|U|2555
12DQ|1|1A|C|2556
12DQ|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains