HL_12DQ_065
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GAAGACCAC
- Length
- 9 nucleotides
- Bulged bases
- 12DQ|1|1A|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DQ_065 not in the Motif Atlas
- Homologous match to HL_8B0X_095
- Geometric discrepancy: 0.1353
- The information below is about HL_8B0X_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.4
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
12DQ|1|1A|G|2819
12DQ|1|1A|A|2820
12DQ|1|1A|A|2821
12DQ|1|1A|G|2822
12DQ|1|1A|A|2823
12DQ|1|1A|C|2824
12DQ|1|1A|C|2825
12DQ|1|1A|A|2826
12DQ|1|1A|C|2827
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
- Chain 1T
- 50S ribosomal protein L19
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