HL_12DQ_070

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

12DQ|1|1a|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_070 not in the Motif Atlas

Homologous match to HL_8B0X_001

Geometric discrepancy: 0.0849

The information below is about HL_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.4

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

12DQ|1|1a|U|12
12DQ|1|1a|U|13
12DQ|1|1a|U|14
12DQ|1|1a|G|15
12DQ|1|1a|A|16
12DQ|1|1a|U|17
12DQ|1|1a|C|18
12DQ|1|1a|C|19
12DQ|1|1a|U|20
12DQ|1|1a|G|21
12DQ|1|1a|G|22

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5