HL_12DQ_111
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 12DQ|1|2A|G|329, 12DQ|1|2A|A|330, 12DQ|1|2A|A|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DQ_111 not in the Motif Atlas
- Homologous match to HL_8B0X_043
- Geometric discrepancy: 0.1876
- The information below is about HL_8B0X_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27670.7
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 18
Unit IDs
12DQ|1|2A|G|327
12DQ|1|2A|U|328
12DQ|1|2A|G|329
12DQ|1|2A|A|330
12DQ|1|2A|A|331
12DQ|1|2A|A|332
12DQ|1|2A|G|333
12DQ|1|2A|C|334
12DQ|1|2A|C|335
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2F
- 50S ribosomal protein L4
- Chain 2Y
- 50S ribosomal protein L24
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