HL_12DQ_141

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

12DQ|1|2A|A|1780, 12DQ|1|2A|C|1781, 12DQ|1|2A|C|1782, 12DQ|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_141 not in the Motif Atlas

Homologous match to HL_8B0X_073

Geometric discrepancy: 0.0786

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.4

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

11

Unit IDs

12DQ|1|2A|U|1777
12DQ|1|2A|U|1778
12DQ|1|2A|U|1779
12DQ|1|2A|A|1780
12DQ|1|2A|C|1781
12DQ|1|2A|C|1782
12DQ|1|2A|A|1783
12DQ|1|2A|A|1784
12DQ|1|2A|A|1785
12DQ|1|2A|A|1786
12DQ|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22