HL_12DQ_151

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_151 not in the Motif Atlas

Homologous match to HL_8B0X_082

Geometric discrepancy: 0.2137

The information below is about HL_8B0X_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2A|G|2303
12DQ|1|2A|G|2304
12DQ|1|2A|A|2305
12DQ|1|2A|C|2306
12DQ|1|2A|G|2307
12DQ|1|2A|G|2308
12DQ|1|2A|A|2309
12DQ|1|2A|A|2310
12DQ|1|2A|A|2311
12DQ|1|2A|U|2312
12DQ|1|2A|C|2313

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5