HL_12DQ_174

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_174 not in the Motif Atlas

Homologous match to HL_8B0X_007

Geometric discrepancy: 0.0875

The information below is about HL_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

12DQ|1|2a|C|320
12DQ|1|2a|A|321
12DQ|1|2a|C|322
12DQ|1|2a|U|323
12DQ|1|2a|G|324
12DQ|1|2a|A|325
12DQ|1|2a|G|326
12DQ|1|2a|A|327
12DQ|1|2a|C|328
12DQ|1|2a|A|329
12DQ|1|2a|C|330
12DQ|1|2a|G|331
12DQ|1|2a|G|332
12DQ|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20