HL_1A51_004

3D structure

PDB id

1A51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

1A51|4|A|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1A51_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2615

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

1A51|4|A|G|85
1A51|4|A|G|86
1A51|4|A|U|87
1A51|4|A|C|88
1A51|4|A|U|89
1A51|4|A|C|90
1A51|4|A|C|91

Current chains

Chain A

5S RRNA LOOP D/LOOP E

Nearby chains