HL_1AQ4_006

3D structure

PDB id

1AQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUAC

Length

6 nucleotides

Bulged bases

1AQ4|1|S|U|10||||P_1, 1AQ4|1|S|A|12||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1AQ4_006 not in the Motif Atlas

Geometric match to HL_5MSF_001

Geometric discrepancy: 0.105

The information below is about HL_5MSF_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

1AQ4|1|S|G|8||||P_1
1AQ4|1|S|A|9||||P_1
1AQ4|1|S|U|10||||P_1
1AQ4|1|S|U|11||||P_1
1AQ4|1|S|A|12||||P_1
1AQ4|1|S|C|13||||P_1

Current chains

Chain S

RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')

Nearby chains

Chain B

PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN)

Chain C

PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN)