HL_1BJ2_011
3D structure
- PDB id
- 1BJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, 8 STRUCTURES
- Experimental method
- SOLUTION NMR
- Resolution
Loop
- Sequence
- GGAUGGUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1BJ2_011 not in the Motif Atlas
- Geometric match to HL_7JRR_001
- Geometric discrepancy: 0.3429
- The information below is about HL_7JRR_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
1BJ2|6|A|G|7
1BJ2|6|A|G|8
1BJ2|6|A|A|9
1BJ2|6|A|U|10
1BJ2|6|A|G|11
1BJ2|6|A|G|12
1BJ2|6|A|U|13
1BJ2|6|A|U|14
1BJ2|6|A|C|15
Current chains
- Chain A
- RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3')
Nearby chains
- Chain B
- RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3')
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