HL_1C0A_002

3D structure

PDB id

1C0A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCU(QUO)UCACG

Length

9 nucleotides

Bulged bases

1C0A|1|B|U|633, 1C0A|1|B|A|637

QA status

Modified nucleotides: QUO

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1C0A_002 not in the Motif Atlas

Homologous match to HL_4WJ4_002

Geometric discrepancy: 0.2067

The information below is about HL_4WJ4_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

Anticodon loop

Motif group

HL_69186.3

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

1C0A|1|B|C|631
1C0A|1|B|C|632
1C0A|1|B|U|633
1C0A|1|B|QUO|634
1C0A|1|B|U|635
1C0A|1|B|C|636
1C0A|1|B|A|637
1C0A|1|B|C|638
1C0A|1|B|G|639

Current chains

Chain B

ASPARTYL TRNA

Nearby chains

Chain A

ASPARTYL TRNA SYNTHETASE