HL_1C0A_003

3D structure

PDB id

1C0A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(5MU)(PSU)CGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1C0A_003 not in the Motif Atlas

Homologous match to HL_1IL2_003

Geometric discrepancy: 0.117

The information below is about HL_1IL2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1C0A|1|B|G|653
1C0A|1|B|5MU|654
1C0A|1|B|PSU|655
1C0A|1|B|C|656
1C0A|1|B|G|657
1C0A|1|B|A|658
1C0A|1|B|G|659
1C0A|1|B|U|660
1C0A|1|B|C|661

Current chains

Chain B

ASPARTYL TRNA

Nearby chains