HL_1E8O_001

3D structure

PDB id

1E8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of the Alu domain of the mammalian SRP

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUGGCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.4

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1E8O|1|E|G|110
1E8O|1|E|G|111
1E8O|1|E|U|112
1E8O|1|E|G|113
1E8O|1|E|G|114
1E8O|1|E|C|115
1E8O|1|E|G|116
1E8O|1|E|C|117

Current chains

Chain E

7SL RNA

Nearby chains

Chain A

SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN

Chain B

SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN

Chain D

SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN