3D structure

PDB id
1E8O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Core of the Alu domain of the mammalian SRP
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUGGCGC
Length
8 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84085.3
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
17

Unit IDs

1E8O|1|E|G|110
1E8O|1|E|G|111
1E8O|1|E|U|112
1E8O|1|E|G|113
1E8O|1|E|G|114
1E8O|1|E|C|115
1E8O|1|E|G|116
1E8O|1|E|C|117

Current chains

Chain E
7SL RNA

Nearby chains

Chain A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
Chain B
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
Chain D
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN

Coloring options:

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