HL_1E95_003

3D structure

PDB id

1E95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGCUCCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1E95_003 not in the Motif Atlas

Geometric match to HL_1U6B_002

Geometric discrepancy: 0.3476

The information below is about HL_1U6B_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1E95|3|A|C|6
1E95|3|A|A|7
1E95|3|A|G|8
1E95|3|A|C|9
1E95|3|A|U|10
1E95|3|A|C|11
1E95|3|A|C|12
1E95|3|A|A|13
1E95|3|A|G|14

Current chains

Chain A

RNA (5'-(*GP*CP*GP*GP*CP*CP*AP*GP*CP*UP*CP* CP*AP*GP*GP*CP*CP*GP*CP*CP*AP*AP*AP*CP* AP*AP*UP*AP*UP*GP*GP*AP*GP*CP*AP*C)-3')

Nearby chains