HL_1EFW_002

3D structure

PDB id

1EFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCU(QUO)UC(2MA)CG

Length

9 nucleotides

Bulged bases

1EFW|1|C|U|33

QA status

Modified nucleotides: QUO, 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1EFW_002 not in the Motif Atlas

Homologous match to HL_4WJ4_002

Geometric discrepancy: 0.2252

The information below is about HL_4WJ4_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50537.6

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

1EFW|1|C|C|31
1EFW|1|C|C|32
1EFW|1|C|U|33
1EFW|1|C|QUO|34
1EFW|1|C|U|35
1EFW|1|C|C|36
1EFW|1|C|2MA|37
1EFW|1|C|C|38
1EFW|1|C|G|39

Current chains

Chain C

ASPARTYL-TRNA

Nearby chains

Chain A

ASPARTYL-TRNA SYNTHETASE