HL_1EFW_004

3D structure

PDB id

1EFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG(H2U)CGG(H2U)(H2U)AG

Length

11 nucleotides

Bulged bases

1EFW|1|D|C|17, 1EFW|1|D|G|18, 1EFW|1|D|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1EFW_004 not in the Motif Atlas

Homologous match to HL_1FIR_001

Geometric discrepancy: 0.12

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

1EFW|1|D|C|13
1EFW|1|D|A|14
1EFW|1|D|G|15
1EFW|1|D|H2U|16
1EFW|1|D|C|17
1EFW|1|D|G|18
1EFW|1|D|G|19
1EFW|1|D|H2U|20
1EFW|1|D|H2U|20|||A
1EFW|1|D|A|21
1EFW|1|D|G|22

Current chains

Chain D

ASPARTYL-TRNA

Nearby chains