HL_1ESY_014

3D structure

PDB id

1ESY (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGGUGA

Length

6 nucleotides

Bulged bases

1ESY|14|A|G|9, 1ESY|14|A|U|10, 1ESY|14|A|G|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ESY_014 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2908

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1ESY|14|A|U|7
1ESY|14|A|G|8
1ESY|14|A|G|9
1ESY|14|A|U|10
1ESY|14|A|G|11
1ESY|14|A|A|12

Current chains

Chain A

RNA (5'-R(P*GP*GP*CP*GP*AP*CP*UP*GP*GP*UP*GP*AP*GP*UP*AP*CP*GP*CP*C)-3')

Nearby chains