HL_1EXY_002

3D structure

PDB id

1EXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1EXY_002 not in the Motif Atlas

Geometric match to HL_4LFB_022

Geometric discrepancy: 0.272

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1EXY|2|A|C|12
1EXY|2|A|G|13
1EXY|2|A|C|14
1EXY|2|A|A|15
1EXY|2|A|A|16
1EXY|2|A|G|17

Current chains

Chain A

RNA APTAMER, 33-MER

Nearby chains

Chain B

HTLV-1 REX PEPTIDE