HL_1FFK_002
3D structure
- PDB id
- 1FFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGCACGGAG
- Length
- 9 nucleotides
- Bulged bases
- 1FFK|1|0|C|87
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1FFK_002 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.058
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
1FFK|1|0|C|83
1FFK|1|0|G|84
1FFK|1|0|C|85
1FFK|1|0|A|86
1FFK|1|0|C|87
1FFK|1|0|G|88
1FFK|1|0|G|89
1FFK|1|0|A|90
1FFK|1|0|G|91
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain Q
- RIBOSOMAL PROTEIN L24
- Chain S
- RIBOSOMAL PROTEIN L29
- Chain Y
- RIBOSOMAL PROTEIN L39E
Coloring options: