HL_1FFK_004

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUCGCG

Length

7 nucleotides

Bulged bases

1FFK|1|0|C|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_004 not in the Motif Atlas

Homologous match to HL_4V9F_005

Geometric discrepancy: 0.1914

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

1FFK|1|0|C|136
1FFK|1|0|U|137
1FFK|1|0|U|138
1FFK|1|0|C|139
1FFK|1|0|G|140
1FFK|1|0|C|141
1FFK|1|0|G|142

Current chains

Chain 0

23S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN L15E