HL_1FFK_032

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCUGAUC

Length

7 nucleotides

Bulged bases

1FFK|1|0|C|1431, 1FFK|1|0|U|1435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_032 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.0396

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1FFK|1|0|G|1430
1FFK|1|0|C|1431
1FFK|1|0|U|1432
1FFK|1|0|G|1433
1FFK|1|0|A|1434
1FFK|1|0|U|1435
1FFK|1|0|C|1436

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19

Chain O

RIBOSOMAL PROTEIN L22