HL_1FFK_042

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGGAACG

Length

7 nucleotides

Bulged bases

1FFK|1|0|C|1798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_042 not in the Motif Atlas

Homologous match to HL_4V9F_045

Geometric discrepancy: 0.0584

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1FFK|1|0|C|1793
1FFK|1|0|G|1794
1FFK|1|0|G|1795
1FFK|1|0|A|1796
1FFK|1|0|A|1797
1FFK|1|0|C|1798
1FFK|1|0|G|1799

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19