HL_1FFK_046

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

1FFK|1|0|A|1919

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_046 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0538

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1FFK|1|0|C|1916
1FFK|1|0|G|1917
1FFK|1|0|U|1918
1FFK|1|0|A|1919
1FFK|1|0|C|1920
1FFK|1|0|A|1921
1FFK|1|0|A|1922
1FFK|1|0|G|1923

Current chains

Chain 0

23S RRNA

Nearby chains

Chain Z

RIBOSOMAL PROTEIN L44E