HL_1FFK_053

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1FFK|1|0|A|2302, 1FFK|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_053 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0352

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1FFK|1|0|C|2298
1FFK|1|0|G|2299
1FFK|1|0|A|2300
1FFK|1|0|A|2301
1FFK|1|0|A|2302
1FFK|1|0|A|2303
1FFK|1|0|G|2304
1FFK|1|0|A|2305
1FFK|1|0|U|2306
1FFK|1|0|A|2307
1FFK|1|0|U|2308
1FFK|1|0|C|2309
1FFK|1|0|G|2310

Current chains

Chain 0

23S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN L10E

Chain N

RIBOSOMAL PROTEIN L21E