HL_1FFK_058

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1FFK|1|0|C|2443

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_058 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.0403

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

1FFK|1|0|G|2442
1FFK|1|0|C|2443
1FFK|1|0|U|2444
1FFK|1|0|U|2445
1FFK|1|0|G|2446
1FFK|1|0|A|2447
1FFK|1|0|U|2448
1FFK|1|0|G|2449
1FFK|1|0|C|2450

Current chains

Chain 0

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L15

Chain Z

RIBOSOMAL PROTEIN L44E