HL_1FFK_068

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

1FFK|1|9|C|40

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_068 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.1306

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1FFK|1|9|C|37
1FFK|1|9|A|38
1FFK|1|9|U|39
1FFK|1|9|C|40
1FFK|1|9|C|41
1FFK|1|9|C|42
1FFK|1|9|G|43

Current chains

Chain 9

5S RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

RIBOSOMAL PROTEIN L5

Chain K

RIBOSOMAL PROTEIN L18