HL_1FFZ_004

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1FFZ|1|A|G|2283

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_004 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.1285

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1FFZ|1|A|C|2281
1FFZ|1|A|U|2282
1FFZ|1|A|G|2283
1FFZ|1|A|G|2284
1FFZ|1|A|G|2285
1FFZ|1|A|G|2286
1FFZ|1|A|C|2287
1FFZ|1|A|G|2288
1FFZ|1|A|G|2289

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

R(P*CP*C*)-D(P*A)-R(P*(PU))