HL_1FFZ_005

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1FFZ|1|A|A|2302, 1FFZ|1|A|C|2309

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_005 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0876

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1FFZ|1|A|C|2298
1FFZ|1|A|G|2299
1FFZ|1|A|A|2300
1FFZ|1|A|A|2301
1FFZ|1|A|A|2302
1FFZ|1|A|A|2303
1FFZ|1|A|G|2304
1FFZ|1|A|A|2305
1FFZ|1|A|U|2306
1FFZ|1|A|A|2307
1FFZ|1|A|U|2308
1FFZ|1|A|C|2309
1FFZ|1|A|G|2310

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains