HL_1FFZ_007

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_007 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.0675

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1FFZ|1|A|U|2358
1FFZ|1|A|G|2359
1FFZ|1|A|C|2360
1FFZ|1|A|A|2361
1FFZ|1|A|A|2362
1FFZ|1|A|G|2363
1FFZ|1|A|A|2364
1FFZ|1|A|G|2365

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains