HL_1FFZ_010

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1FFZ|1|A|C|2443

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_010 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.1219

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

1FFZ|1|A|G|2442
1FFZ|1|A|C|2443
1FFZ|1|A|U|2444
1FFZ|1|A|U|2445
1FFZ|1|A|G|2446
1FFZ|1|A|A|2447
1FFZ|1|A|U|2448
1FFZ|1|A|G|2449
1FFZ|1|A|C|2450

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains