HL_1FKA_022

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCAGU*C

Length

8 nucleotides

Bulged bases

1FKA|1|A|A|1074, 1FKA|1|A|G|1075, 1FKA|1|A|U|1076

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FKA_022 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.178

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

1FKA|1|A|G|1070
1FKA|1|A|U|1071
1FKA|1|A|U|1072
1FKA|1|A|C|1077
1FKA|1|A|A|1074
1FKA|1|A|G|1075
1FKA|1|A|U|1076
*
1FKA|1|A|C|1077

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7