HL_1FKA_026

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCCAGCCAUG*C

Length

12 nucleotides

Bulged bases

1FKA|1|A|C|1337, 1FKA|1|A|A|1338, 1FKA|1|A|G|1339, 1FKA|1|A|C|1340, 1FKA|1|A|C|1341, 1FKA|1|A|A|1342, 1FKA|1|A|U|1343

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FKA|1|A|G|1334
1FKA|1|A|G|1344
1FKA|1|A|C|1345
1FKA|1|A|C|1337
1FKA|1|A|A|1338
1FKA|1|A|G|1339
1FKA|1|A|C|1340
1FKA|1|A|C|1341
1FKA|1|A|A|1342
1FKA|1|A|U|1343
1FKA|1|A|G|1344
*
1FKA|1|A|C|1345

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14