HL_1HNW_023

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HNW_023 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3648

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1HNW|1|A|C|1029
1HNW|1|A|C|1030
1HNW|1|A|G|1030|||A
1HNW|1|A|C|1030|||B
1HNW|1|A|G|1030|||C
1HNW|1|A|A|1030|||D
1HNW|1|A|G|1031
1HNW|1|A|G|1032

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains