HL_1HNW_033

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

1HNW|1|A|U|839, 1HNW|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HNW_033 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2716

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

1HNW|1|A|G|837
1HNW|1|A|G|838
1HNW|1|A|U|839
1HNW|1|A|C|840
1HNW|1|A|U|841
1HNW|1|A|C|848
1HNW|1|A|C|849

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain R

30S RIBOSOMAL PROTEIN S18