3D structure

PDB id
1HNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCCGCGAGGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1HNW_034 not in the Motif Atlas
Geometric match to HL_8KAL_008
Geometric discrepancy: 0.3655
The information below is about HL_8KAL_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

1HNW|1|A|C|1028
1HNW|1|A|C|1029
1HNW|1|A|C|1030
1HNW|1|A|G|1030|||A
1HNW|1|A|C|1030|||B
1HNW|1|A|G|1030|||C
1HNW|1|A|A|1030|||D
1HNW|1|A|G|1031
1HNW|1|A|G|1032
1HNW|1|A|G|1033

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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