HL_1HNZ_008

3D structure

PDB id

1HNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HNZ_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0849

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1HNZ|1|A|C|320
1HNZ|1|A|A|321
1HNZ|1|A|C|322
1HNZ|1|A|U|323
1HNZ|1|A|G|324
1HNZ|1|A|A|325
1HNZ|1|A|G|326
1HNZ|1|A|A|327
1HNZ|1|A|C|328
1HNZ|1|A|A|329
1HNZ|1|A|C|330
1HNZ|1|A|G|331
1HNZ|1|A|G|332
1HNZ|1|A|G|333

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20