HL_1HQ1_001

3D structure

PDB id

1HQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE

Experimental method

X-RAY DIFFRACTION

Resolution

1.52 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HQ1_001 not in the Motif Atlas

Geometric match to HL_3LQX_001

Geometric discrepancy: 0.048

The information below is about HL_3LQX_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1HQ1|1|B|C|153
1HQ1|1|B|G|154
1HQ1|1|B|A|155
1HQ1|1|B|A|156
1HQ1|1|B|A|157
1HQ1|1|B|G|158

Current chains

Chain B

4.5S RNA DOMAIN IV

Nearby chains