HL_1HS8_001

3D structure

PDB id

1HS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUCAAUUC

Length

8 nucleotides

Bulged bases

1HS8|1|A|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HS8_001 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.1993

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

1HS8|1|A|G|3
1HS8|1|A|U|4
1HS8|1|A|C|5
1HS8|1|A|A|6
1HS8|1|A|A|7
1HS8|1|A|U|8
1HS8|1|A|U|9
1HS8|1|A|C|10

Current chains

Chain A

5'-R(*GP*CP*GP*UP*CP*AP*AP*UP*UP*CP*GP*CP*A)-3'

Nearby chains