HL_1I96_004

3D structure

PDB id

1I96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

1I96|1|A|U|189, 1I96|1|A|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1I96_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1631

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

1I96|1|A|C|186
1I96|1|A|C|187
1I96|1|A|U|188
1I96|1|A|U|189
1I96|1|A|G|190
1I96|1|A|G|191

Current chains

Chain A

16S RRNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17